PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620503.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 198aa    MW: 22974.8 Da    PI: 9.1037
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.6e-191865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd++l d+vk +G+g+W++Ia++ g++R++k+c++rw +yl
   XP_013620503.1 18 KGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYL 65
                     678*******************************************97 PP

2Myb_DNA-binding61.61.6e-1971116148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l
   XP_013620503.1  71 RGNFTEQEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNTHL 116
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.951365IPR017930Myb domain
SuperFamilySSF466891.15E-3116112IPR009057Homeodomain-like
SMARTSM007172.6E-151767IPR001005SANT/Myb domain
PfamPF002494.8E-171865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-251972IPR009057Homeodomain-like
CDDcd001671.13E-112165No hitNo description
PROSITE profilePS5129428.73766120IPR017930Myb domain
SMARTSM007175.6E-1970118IPR001005SANT/Myb domain
PfamPF002491.7E-1871116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2873120IPR009057Homeodomain-like
CDDcd001672.49E-1373116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090377Biological Processseed trichome initiation
GO:0090378Biological Processseed trichome elongation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MRKKVSSSGE EGNNEYKKGL WTVEEDKILM DYVKAHGKGH WNRIAKKTGL KRCGKSCRLR  60
WMNYLSPNVK RGNFTEQEED LIIRLHKLLG NRWSLIAKRV PGRTDNQVKN YWNTHLSKKL  120
GNKDPKTKPS NGDIVHQISL TNPTETLEET NISNINDNSE IQEDRQGSNY LSSHWVHDDE  180
FELSSLTNMM DFIDGHCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29181207108B-MYB
1h8a_C2e-291312022128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3171410.0HQ317141.1 Brassica rapa subsp. rapa cultivar Tsuda MYB domain protein 66 (MYB66) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620503.11e-147PREDICTED: transcription factor WER-like
SwissprotQ9SEI01e-132WER_ARATH; Transcription factor WER
TrEMBLA0A0D3AJ341e-146A0A0D3AJ34_BRAOL; Uncharacterized protein
STRINGBra023486.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.11e-125myb domain protein 66